Generate spectra given a list of peptides and a PILIS model
- Experimental classes:
- This TOPP-tool is not well tested and not all features might be properly implemented and tested!
| pot. predecessor tools |  PILISSpectraGenerator | pot. successor tools |
| MascotAdapter (or other ID engines) | PILISIdentification | |
| PILISModelTrainer |
This tool generates spectra given a set of peptides and a PILIS model. The list of peptides must be given as idXML files. The peptides are used to generate spectra. Additionally a model file must be given, which contains the fragmentation model and its parameters. If a peptide has charge 0, spectra for all charges from 'min_charge' to 'max_charge' are generated.
The command line parameters of this tool are:
INI file documentation of this tool: